Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 AJ011931.1-201ENST00000618749 2492 ntBASIC18.4■□□□□ 0.54
VPS53Q5VIR6 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.39■□□□□ 0.54
VPS53Q5VIR6 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS53Q5VIR6 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS53Q5VIR6 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 AC098614.1-201ENST00000368528 745 ntBASIC18.39■□□□□ 0.53
VPS53Q5VIR6 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS53Q5VIR6 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 AL158070.2-201ENST00000623713 1621 ntBASIC18.38■□□□□ 0.53
VPS53Q5VIR6 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 FGD5P1-202ENST00000614866 2498 ntBASIC18.38■□□□□ 0.53
VPS53Q5VIR6 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 AC010319.3-201ENST00000597028 470 ntBASIC18.38■□□□□ 0.53
VPS53Q5VIR6 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.38■□□□□ 0.53
VPS53Q5VIR6 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS53Q5VIR6 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms