Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
MSH6P52701 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH6P52701 AL596087.1-201ENST00000400979 1969 ntBASIC20.66■□□□□ 0.9
MSH6P52701 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 ZBTB45P1-201ENST00000452761 1456 ntBASIC20.66■□□□□ 0.9
MSH6P52701 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH6P52701 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
MSH6P52701 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH6P52701 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH6P52701 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
MSH6P52701 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH6P52701 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC20.66■□□□□ 0.9
MSH6P52701 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC20.66■□□□□ 0.9
MSH6P52701 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH6P52701 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH6P52701 RPS15-202ENST00000585665 467 ntTSL 3 BASIC20.66■□□□□ 0.9
MSH6P52701 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
MSH6P52701 AC002472.4-201ENST00000641915 272 ntBASIC20.66■□□□□ 0.9
MSH6P52701 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH6P52701 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH6P52701 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH6P52701 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
MSH6P52701 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 ACTBP7-201ENST00000418351 1124 ntBASIC20.65■□□□□ 0.9
MSH6P52701 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH6P52701 KRT17P4-201ENST00000429445 819 ntBASIC20.65■□□□□ 0.9
MSH6P52701 ALG3P1-201ENST00000508806 1114 ntBASIC20.65■□□□□ 0.9
MSH6P52701 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC20.65■□□□□ 0.9
MSH6P52701 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC20.65■□□□□ 0.9
MSH6P52701 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC20.65■□□□□ 0.9
MSH6P52701 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH6P52701 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH6P52701 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
MSH6P52701 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH6P52701 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
MSH6P52701 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC20.64■□□□□ 0.9
MSH6P52701 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC20.64■□□□□ 0.9
MSH6P52701 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
MSH6P52701 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MSH6P52701 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MSH6P52701 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 HLA-DMA-203ENST00000395305 777 ntBASIC20.64■□□□□ 0.89
MSH6P52701 XBP1P1-201ENST00000436573 652 ntBASIC20.64■□□□□ 0.89
MSH6P52701 CICP12-201ENST00000455801 843 ntBASIC20.64■□□□□ 0.89
MSH6P52701 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC20.64■□□□□ 0.89
MSH6P52701 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC20.64■□□□□ 0.89
MSH6P52701 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC20.64■□□□□ 0.89
MSH6P52701 DDX5-235ENST00000630471 473 ntTSL 4 BASIC20.64■□□□□ 0.89
MSH6P52701 AL451007.2-201ENST00000632004 563 ntBASIC20.64■□□□□ 0.89
MSH6P52701 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC20.64■□□□□ 0.89
MSH6P52701 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.64■□□□□ 0.89
MSH6P52701 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC20.64■□□□□ 0.89
MSH6P52701 AC127383.1-201ENST00000444697 1800 ntBASIC20.64■□□□□ 0.89
MSH6P52701 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
MSH6P52701 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.64■□□□□ 0.89
MSH6P52701 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 AL137783.1-201ENST00000623494 1896 ntBASIC20.64■□□□□ 0.89
MSH6P52701 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC20.64■□□□□ 0.89
MSH6P52701 AC018629.1-201ENST00000623381 1736 ntBASIC20.64■□□□□ 0.89
MSH6P52701 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.64■□□□□ 0.89
MSH6P52701 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms