Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.88■□□□□ 0.45
BRCA1P38398 KRT8P2-201ENST00000556193 944 ntBASIC17.88■□□□□ 0.45
BRCA1P38398 AC023968.2-201ENST00000560593 1049 ntBASIC17.88■□□□□ 0.45
BRCA1P38398 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC124068.2-201ENST00000569473 1109 ntBASIC17.88■□□□□ 0.45
BRCA1P38398 MBP-238ENST00000580402 915 ntTSL 5 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
BRCA1P38398 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
BRCA1P38398 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 PCDHA12-202ENST00000613593 2588 ntBASIC17.88■□□□□ 0.45
BRCA1P38398 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
BRCA1P38398 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.87■□□□□ 0.45
BRCA1P38398 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
BRCA1P38398 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.87■□□□□ 0.45
BRCA1P38398 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.87■□□□□ 0.45
BRCA1P38398 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
BRCA1P38398 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 AC018638.5-201ENST00000450885 754 ntBASIC17.87■□□□□ 0.45
BRCA1P38398 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.87■□□□□ 0.45
BRCA1P38398 GDNF-207ENST00000515058 764 ntTSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 IGHEP2-201ENST00000519308 1256 ntBASIC17.87■□□□□ 0.45
BRCA1P38398 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC17.87■□□□□ 0.45
BRCA1P38398 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC17.87■□□□□ 0.45
BRCA1P38398 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 APOC1-209ENST00000592885 562 ntTSL 3 BASIC17.87■□□□□ 0.45
BRCA1P38398 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 AC020904.3-201ENST00000624199 442 ntBASIC17.87■□□□□ 0.45
BRCA1P38398 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
BRCA1P38398 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.87■□□□□ 0.45
BRCA1P38398 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.87■□□□□ 0.45
BRCA1P38398 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRCA1P38398 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC17.86■□□□□ 0.45
BRCA1P38398 AF274858.1-201ENST00000406288 372 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC17.86■□□□□ 0.45
BRCA1P38398 HLA-DPA2-205ENST00000433582 733 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC17.86■□□□□ 0.45
BRCA1P38398 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
BRCA1P38398 RN7SL530P-201ENST00000485097 298 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 AL132994.1-201ENST00000554098 400 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 NT5C-204ENST00000578337 582 ntTSL 2 BASIC17.86■□□□□ 0.45
BRCA1P38398 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.86■□□□□ 0.45
BRCA1P38398 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC17.86■□□□□ 0.45
BRCA1P38398 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC17.86■□□□□ 0.45
BRCA1P38398 AC011462.4-201ENST00000616866 449 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 CR392039.1-201ENST00000623217 204 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.86■□□□□ 0.45
BRCA1P38398 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
BRCA1P38398 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
BRCA1P38398 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
BRCA1P38398 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BRCA1P38398 AL591122.2-201ENST00000624125 1853 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 AC006372.4-201ENST00000624122 1543 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC17.86■□□□□ 0.45
BRCA1P38398 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC17.86■□□□□ 0.45
BRCA1P38398 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
BRCA1P38398 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
BRCA1P38398 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.86■□□□□ 0.45
BRCA1P38398 GNG10P1-201ENST00000452289 199 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 AC063952.3-201ENST00000467756 308 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 AC095040.1-201ENST00000513286 675 ntBASIC17.86■□□□□ 0.45
BRCA1P38398 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.85■□□□□ 0.45
BRCA1P38398 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
BRCA1P38398 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
BRCA1P38398 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms