Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC11.86□□□□□ -0.51
CXCL1P09341 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC11.86□□□□□ -0.51
CXCL1P09341 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 AP001972.5-201ENST00000624624 2338 ntBASIC11.86□□□□□ -0.51
CXCL1P09341 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
CXCL1P09341 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC11.86□□□□□ -0.51
CXCL1P09341 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 FIS1-203ENST00000442303 631 ntTSL 3 BASIC11.86□□□□□ -0.51
CXCL1P09341 FAM185BP-201ENST00000443595 716 ntBASIC11.86□□□□□ -0.51
CXCL1P09341 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC11.86□□□□□ -0.51
CXCL1P09341 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC11.86□□□□□ -0.51
CXCL1P09341 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 TPM1-218ENST00000559281 851 ntTSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 QPRT-203ENST00000562473 579 ntTSL 3 BASIC11.86□□□□□ -0.51
CXCL1P09341 AL031432.2-201ENST00000566714 459 ntBASIC11.86□□□□□ -0.51
CXCL1P09341 AL928711.1-201ENST00000570165 459 ntBASIC11.86□□□□□ -0.51
CXCL1P09341 AC087388.1-201ENST00000571370 1112 ntBASIC11.86□□□□□ -0.51
CXCL1P09341 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 MIR1199-201ENST00000621445 119 ntBASIC11.86□□□□□ -0.51
CXCL1P09341 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC11.86□□□□□ -0.51
CXCL1P09341 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC11.86□□□□□ -0.51
CXCL1P09341 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC11.86□□□□□ -0.51
CXCL1P09341 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 AL365181.3-201ENST00000605886 3222 ntBASIC11.86□□□□□ -0.51
CXCL1P09341 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC11.86□□□□□ -0.51
CXCL1P09341 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CXCL1P09341 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC11.85□□□□□ -0.51
CXCL1P09341 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
CXCL1P09341 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
CXCL1P09341 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 HMGA1P7-201ENST00000406908 502 ntBASIC11.85□□□□□ -0.51
CXCL1P09341 COPS8-203ENST00000409334 794 ntTSL 5 BASIC11.85□□□□□ -0.51
CXCL1P09341 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CXCL1P09341 DUSP5P1-201ENST00000441325 1139 ntBASIC11.85□□□□□ -0.51
CXCL1P09341 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC11.85□□□□□ -0.51
CXCL1P09341 KRT18P34-201ENST00000488218 1270 ntBASIC11.85□□□□□ -0.51
CXCL1P09341 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC11.85□□□□□ -0.51
CXCL1P09341 FOSL1P1-201ENST00000511041 816 ntBASIC11.85□□□□□ -0.51
CXCL1P09341 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC11.85□□□□□ -0.51
CXCL1P09341 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
CXCL1P09341 AC109635.5-201ENST00000533593 962 ntBASIC11.85□□□□□ -0.51
CXCL1P09341 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC11.85□□□□□ -0.51
CXCL1P09341 AC021087.4-201ENST00000563761 564 ntBASIC11.85□□□□□ -0.51
CXCL1P09341 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms