Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXD4P09016 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.9□□□□□ -0.18
HOXD4P09016 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD4P09016 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
HOXD4P09016 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
HOXD4P09016 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXD4P09016 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HOXD4P09016 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HOXD4P09016 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
HOXD4P09016 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HOXD4P09016 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.89□□□□□ -0.19
HOXD4P09016 AC010327.5-201ENST00000586923 3061 ntBASIC13.89□□□□□ -0.19
HOXD4P09016 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXD4P09016 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXD4P09016 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 MIR1908-201ENST00000410394 80 ntBASIC13.89□□□□□ -0.19
HOXD4P09016 AL355994.2-201ENST00000447882 704 ntBASIC13.89□□□□□ -0.19
HOXD4P09016 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXD4P09016 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
HOXD4P09016 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXD4P09016 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXD4P09016 AC005252.2-201ENST00000624630 1141 ntBASIC13.89□□□□□ -0.19
HOXD4P09016 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXD4P09016 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXD4P09016 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
HOXD4P09016 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXD4P09016 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 PKD1P5-201ENST00000532415 10291 ntBASIC13.88□□□□□ -0.19
HOXD4P09016 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXD4P09016 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 KRT8P44-201ENST00000441609 1350 ntBASIC13.88□□□□□ -0.19
HOXD4P09016 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
HOXD4P09016 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXD4P09016 BRWD1P1-201ENST00000401091 371 ntBASIC13.88□□□□□ -0.19
HOXD4P09016 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXD4P09016 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXD4P09016 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXD4P09016 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXD4P09016 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXD4P09016 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXD4P09016 AC107373.2-201ENST00000607735 490 ntBASIC13.88□□□□□ -0.19
HOXD4P09016 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD4P09016 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXD4P09016 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD4P09016 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXD4P09016 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms