Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CUX2O14529 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
CUX2O14529 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CUX2O14529 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CUX2O14529 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
CUX2O14529 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CUX2O14529 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
CUX2O14529 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CUX2O14529 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CUX2O14529 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CUX2O14529 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC25.29■■□□□ 1.64
CUX2O14529 AC018629.1-201ENST00000623381 1736 ntBASIC25.29■■□□□ 1.64
CUX2O14529 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
CUX2O14529 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC25.29■■□□□ 1.64
CUX2O14529 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
CUX2O14529 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC25.29■■□□□ 1.64
CUX2O14529 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC25.29■■□□□ 1.64
CUX2O14529 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
CUX2O14529 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC25.29■■□□□ 1.64
CUX2O14529 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC25.29■■□□□ 1.64
CUX2O14529 NF1P11-201ENST00000621292 1282 ntBASIC25.29■■□□□ 1.64
CUX2O14529 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CUX2O14529 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CUX2O14529 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
CUX2O14529 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC25.29■■□□□ 1.64
CUX2O14529 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CUX2O14529 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CUX2O14529 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CUX2O14529 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC25.28■■□□□ 1.64
CUX2O14529 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
CUX2O14529 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
CUX2O14529 CFL1P6-201ENST00000400899 494 ntBASIC25.28■■□□□ 1.64
CUX2O14529 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 GGTLC4P-201ENST00000402176 664 ntBASIC25.28■■□□□ 1.64
CUX2O14529 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 AC027612.2-202ENST00000445955 1199 ntBASIC25.28■■□□□ 1.64
CUX2O14529 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC25.28■■□□□ 1.64
CUX2O14529 EEF1DP7-201ENST00000580496 513 ntBASIC25.28■■□□□ 1.64
CUX2O14529 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC25.28■■□□□ 1.64
CUX2O14529 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC25.28■■□□□ 1.64
CUX2O14529 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC25.28■■□□□ 1.64
CUX2O14529 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC25.28■■□□□ 1.64
CUX2O14529 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC25.28■■□□□ 1.64
CUX2O14529 RN7SL602P-201ENST00000578326 324 ntBASIC25.28■■□□□ 1.64
CUX2O14529 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC25.28■■□□□ 1.64
CUX2O14529 RN7SL718P-201ENST00000581254 303 ntBASIC25.28■■□□□ 1.64
CUX2O14529 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CUX2O14529 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC25.27■■□□□ 1.64
CUX2O14529 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC25.27■■□□□ 1.64
CUX2O14529 AD000864.1-201ENST00000624076 2295 ntBASIC25.27■■□□□ 1.64
CUX2O14529 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
CUX2O14529 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
CUX2O14529 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC25.27■■□□□ 1.64
CUX2O14529 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC25.27■■□□□ 1.64
CUX2O14529 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC25.27■■□□□ 1.64
CUX2O14529 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC25.27■■□□□ 1.64
CUX2O14529 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC25.27■■□□□ 1.64
CUX2O14529 CELP-201ENST00000411440 1249 ntTSL 5 BASIC25.27■■□□□ 1.64
CUX2O14529 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC25.27■■□□□ 1.64
CUX2O14529 VENTXP4-201ENST00000449029 958 ntBASIC25.27■■□□□ 1.64
CUX2O14529 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC25.27■■□□□ 1.64
CUX2O14529 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC25.27■■□□□ 1.64
CUX2O14529 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC25.27■■□□□ 1.64
CUX2O14529 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC25.27■■□□□ 1.64
CUX2O14529 AC015912.3-201ENST00000619432 348 ntBASIC25.27■■□□□ 1.64
CUX2O14529 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 PCDHA12-202ENST00000613593 2588 ntBASIC25.27■■□□□ 1.64
CUX2O14529 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CUX2O14529 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
CUX2O14529 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CUX2O14529 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
CUX2O14529 ILF3-AS1-201ENST00000591501 1983 ntBASIC25.26■■□□□ 1.63
CUX2O14529 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CUX2O14529 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CUX2O14529 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC25.26■■□□□ 1.63
CUX2O14529 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC25.26■■□□□ 1.63
CUX2O14529 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CUX2O14529 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
CUX2O14529 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC25.26■■□□□ 1.63
CUX2O14529 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CUX2O14529 SERF2-209ENST00000409646 559 ntTSL 4 BASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms