Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 AC005034.1-201ENST00000426657 489 ntBASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 ENPP7P5-201ENST00000541031 1031 ntBASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 CU634019.7-201ENST00000624153 1185 ntBASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 FP236241.2-201ENST00000624906 1185 ntBASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ATG4BQ9Y4P1 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 NUS1P3-201ENST00000423502 862 ntBASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 GAPDHP21-201ENST00000450301 1010 ntBASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 CLUHP6-201ENST00000580789 941 ntBASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 AC239800.4-201ENST00000603712 296 ntBASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 AL033527.5-201ENST00000641382 801 ntBASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
ATG4BQ9Y4P1 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms