Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 AC012508.2-201ENST00000567613 1472 ntBASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 AL354989.2-201ENST00000435838 1540 ntBASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.54□□□□□ -0.24
CLCF1Q9UBD9 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 AC055811.4-201ENST00000624039 1754 ntBASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 REXO1L5P-201ENST00000622260 2098 ntBASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 BRWD1P1-201ENST00000401091 371 ntBASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 RPL13AP20-201ENST00000459725 609 ntBASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLCF1Q9UBD9 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 AL157414.3-201ENST00000624276 1954 ntBASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms