Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 FAM86MP-201ENST00000340703 885 ntBASIC16.32■□□□□ 0.2
CNTN3Q9P232 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 FTLP10-202ENST00000505798 471 ntBASIC16.32■□□□□ 0.2
CNTN3Q9P232 AL391280.1-201ENST00000506969 1062 ntBASIC16.32■□□□□ 0.2
CNTN3Q9P232 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 FAM86HP-204ENST00000513466 959 ntBASIC16.32■□□□□ 0.2
CNTN3Q9P232 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 OR10B1P-201ENST00000601666 907 ntBASIC16.32■□□□□ 0.2
CNTN3Q9P232 AC138035.3-201ENST00000622706 2791 ntBASIC16.32■□□□□ 0.2
CNTN3Q9P232 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CNTN3Q9P232 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.32■□□□□ 0.2
CNTN3Q9P232 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 AL109954.1-202ENST00000564051 2148 ntBASIC16.31■□□□□ 0.2
CNTN3Q9P232 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 COX5BP1-201ENST00000507622 393 ntBASIC16.31■□□□□ 0.2
CNTN3Q9P232 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 RN7SL713P-201ENST00000582127 302 ntBASIC16.31■□□□□ 0.2
CNTN3Q9P232 AC073413.1-201ENST00000603927 732 ntBASIC16.31■□□□□ 0.2
CNTN3Q9P232 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CNTN3Q9P232 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNTN3Q9P232 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms