Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC098934.1-203ENST00000442868 1262 ntBASIC15.03■□□□□ -0
TTC28Q96AY4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 ALG1L15P-201ENST00000482834 794 ntBASIC15.03■□□□□ -0
TTC28Q96AY4 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC15.03■□□□□ -0
TTC28Q96AY4 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC15.03■□□□□ -0
TTC28Q96AY4 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC008764.6-201ENST00000595909 2069 ntBASIC15.03■□□□□ -0
TTC28Q96AY4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.03■□□□□ -0
TTC28Q96AY4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.03■□□□□ -0
TTC28Q96AY4 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC15.03■□□□□ -0
TTC28Q96AY4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 KRT18P4-201ENST00000422599 1288 ntBASIC15.03■□□□□ -0
TTC28Q96AY4 AC007881.1-201ENST00000437460 187 ntBASIC15.03■□□□□ -0
TTC28Q96AY4 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC15.03■□□□□ -0
TTC28Q96AY4 AC112220.4-201ENST00000604982 1263 ntBASIC15.03■□□□□ -0
TTC28Q96AY4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
TTC28Q96AY4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.02■□□□□ -0
TTC28Q96AY4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.02■□□□□ -0
TTC28Q96AY4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.02■□□□□ -0
TTC28Q96AY4 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
TTC28Q96AY4 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
TTC28Q96AY4 PYY2-201ENST00000315776 282 ntBASIC15.02■□□□□ -0
TTC28Q96AY4 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC15.02■□□□□ -0
TTC28Q96AY4 AL121949.1-201ENST00000402043 968 ntBASIC15.02■□□□□ -0
TTC28Q96AY4 MIR1226-201ENST00000408658 75 ntBASIC15.02■□□□□ -0
TTC28Q96AY4 AC026884.1-201ENST00000418296 457 ntBASIC15.02■□□□□ -0
TTC28Q96AY4 FDPSP7-201ENST00000429043 1054 ntBASIC15.02■□□□□ -0
TTC28Q96AY4 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TTC28Q96AY4 AC091304.3-201ENST00000566500 716 ntBASIC15.02■□□□□ -0
TTC28Q96AY4 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.02■□□□□ -0
TTC28Q96AY4 ACTBP9-201ENST00000587663 1099 ntBASIC15.02■□□□□ -0
TTC28Q96AY4 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
TTC28Q96AY4 MIR6720-201ENST00000611664 98 ntBASIC15.02■□□□□ -0
TTC28Q96AY4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.02■□□□□ -0
TTC28Q96AY4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
TTC28Q96AY4 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.02■□□□□ -0
TTC28Q96AY4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 FUCA1P1-201ENST00000374476 1351 ntBASIC15.02□□□□□ -0.01
TTC28Q96AY4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 B9D1-206ENST00000461069 923 ntTSL 2 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 COX5A-205ENST00000568517 582 ntTSL 3 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC15.02□□□□□ -0.01
TTC28Q96AY4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 BCL2-203ENST00000589955 5011 ntBASIC15.02□□□□□ -0.01
TTC28Q96AY4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.02□□□□□ -0.01
TTC28Q96AY4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TTC28Q96AY4 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TTC28Q96AY4 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TTC28Q96AY4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TTC28Q96AY4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 DNM1P48-201ENST00000419538 439 ntBASIC15.01□□□□□ -0.01
TTC28Q96AY4 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 PRMT1P1-201ENST00000604252 1009 ntBASIC15.01□□□□□ -0.01
TTC28Q96AY4 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.01□□□□□ -0.01
TTC28Q96AY4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms