Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC007686.3-201ENST00000619017 3487 ntBASIC14.48□□□□□ -0.09
LIM2P55344 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
LIM2P55344 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.47□□□□□ -0.09
LIM2P55344 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.47□□□□□ -0.09
LIM2P55344 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.47□□□□□ -0.09
LIM2P55344 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.47□□□□□ -0.09
LIM2P55344 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.47□□□□□ -0.09
LIM2P55344 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.47□□□□□ -0.09
LIM2P55344 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.47□□□□□ -0.09
LIM2P55344 AC067930.6-201ENST00000623257 4947 ntBASIC14.47□□□□□ -0.09
LIM2P55344 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
LIM2P55344 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
LIM2P55344 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LIM2P55344 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
LIM2P55344 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 REXO1L2P-201ENST00000425429 2069 ntBASIC14.46□□□□□ -0.09
LIM2P55344 AC232323.1-201ENST00000540724 2099 ntBASIC14.46□□□□□ -0.09
LIM2P55344 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
LIM2P55344 REXO1L5P-201ENST00000622260 2098 ntBASIC14.46□□□□□ -0.09
LIM2P55344 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 AL360270.3-201ENST00000609118 1348 ntBASIC14.46□□□□□ -0.09
LIM2P55344 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
LIM2P55344 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LIM2P55344 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.46□□□□□ -0.09
LIM2P55344 AC011495.1-201ENST00000498085 584 ntBASIC14.46□□□□□ -0.09
LIM2P55344 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.46□□□□□ -0.09
LIM2P55344 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
LIM2P55344 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LIM2P55344 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.46□□□□□ -0.09
LIM2P55344 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
LIM2P55344 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
LIM2P55344 AP001063.1-201ENST00000568332 529 ntBASIC14.46□□□□□ -0.09
LIM2P55344 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.46□□□□□ -0.09
LIM2P55344 PRSS30P-206ENST00000641773 873 ntBASIC14.46□□□□□ -0.09
LIM2P55344 AC105233.6-201ENST00000642093 218 ntBASIC14.46□□□□□ -0.09
LIM2P55344 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms