Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SHMT2P34897 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.98□□□□□ -0.01
SHMT2P34897 AC112693.3-201ENST00000624819 1983 ntBASIC14.98□□□□□ -0.01
SHMT2P34897 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
SHMT2P34897 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.98□□□□□ -0.01
SHMT2P34897 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.98□□□□□ -0.01
SHMT2P34897 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.97□□□□□ -0.01
SHMT2P34897 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 PKD1P5-201ENST00000532415 10291 ntBASIC14.97□□□□□ -0.01
SHMT2P34897 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SHMT2P34897 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 AC007389.4-201ENST00000454674 793 ntBASIC14.97□□□□□ -0.01
SHMT2P34897 RN7SL837P-201ENST00000463010 287 ntBASIC14.97□□□□□ -0.01
SHMT2P34897 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.97□□□□□ -0.01
SHMT2P34897 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.97□□□□□ -0.01
SHMT2P34897 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.97□□□□□ -0.01
SHMT2P34897 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.97□□□□□ -0.01
SHMT2P34897 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.97□□□□□ -0.01
SHMT2P34897 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.97□□□□□ -0.01
SHMT2P34897 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.97□□□□□ -0.01
SHMT2P34897 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.97□□□□□ -0.01
SHMT2P34897 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
SHMT2P34897 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.97□□□□□ -0.01
SHMT2P34897 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.97□□□□□ -0.01
SHMT2P34897 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.97□□□□□ -0.01
SHMT2P34897 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SHMT2P34897 AL138799.1-201ENST00000448213 1675 ntBASIC14.97□□□□□ -0.01
SHMT2P34897 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.96□□□□□ -0.01
SHMT2P34897 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.96□□□□□ -0.01
SHMT2P34897 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.96□□□□□ -0.01
SHMT2P34897 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SHMT2P34897 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.96□□□□□ -0.01
SHMT2P34897 AC232323.1-201ENST00000540724 2099 ntBASIC14.96□□□□□ -0.01
SHMT2P34897 REXO1L5P-201ENST00000622260 2098 ntBASIC14.96□□□□□ -0.01
SHMT2P34897 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
SHMT2P34897 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
SHMT2P34897 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.01
SHMT2P34897 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.96□□□□□ -0.01
SHMT2P34897 TTTY23B-201ENST00000442790 549 ntBASIC14.96□□□□□ -0.01
SHMT2P34897 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.96□□□□□ -0.01
SHMT2P34897 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.96□□□□□ -0.01
SHMT2P34897 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.96□□□□□ -0.01
SHMT2P34897 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms