Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A3P12111 AC025186.1-201ENST00000478174 870 ntBASIC15.35■□□□□ 0.05
COL6A3P12111 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC15.35■□□□□ 0.05
COL6A3P12111 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC15.35■□□□□ 0.05
COL6A3P12111 AC245369.7-201ENST00000631386 350 ntBASIC15.35■□□□□ 0.05
COL6A3P12111 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.35■□□□□ 0.05
COL6A3P12111 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL6A3P12111 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
COL6A3P12111 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A3P12111 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A3P12111 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL6A3P12111 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A3P12111 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC15.35■□□□□ 0.05
COL6A3P12111 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC15.35■□□□□ 0.05
COL6A3P12111 COX5A-205ENST00000568517 582 ntTSL 3 BASIC15.35■□□□□ 0.05
COL6A3P12111 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A3P12111 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC15.35■□□□□ 0.05
COL6A3P12111 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A3P12111 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.35■□□□□ 0.05
COL6A3P12111 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC15.35■□□□□ 0.05
COL6A3P12111 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.35■□□□□ 0.05
COL6A3P12111 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL6A3P12111 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 AL080243.1-201ENST00000423293 1060 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 CDKN2A-AS1-201ENST00000441769 823 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 AC025594.1-201ENST00000469533 543 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC15.34■□□□□ 0.05
COL6A3P12111 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC15.34■□□□□ 0.05
COL6A3P12111 ABCC6P1-203ENST00000565566 1170 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC15.34■□□□□ 0.05
COL6A3P12111 HLA-K-203ENST00000430151 1046 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 KRT127P-201ENST00000547183 433 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 MIR4746-201ENST00000579802 71 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 AP001462.1-201ENST00000594089 452 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.34■□□□□ 0.05
COL6A3P12111 CICP11-201ENST00000434745 2827 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.34■□□□□ 0.05
COL6A3P12111 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 AC093106.1-201ENST00000437271 352 ntBASIC15.34■□□□□ 0.05
COL6A3P12111 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.34■□□□□ 0.05
COL6A3P12111 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC15.34■□□□□ 0.05
COL6A3P12111 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL6A3P12111 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.34■□□□□ 0.05
COL6A3P12111 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
COL6A3P12111 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL6A3P12111 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.05
COL6A3P12111 AC011477.6-201ENST00000604980 1927 ntBASIC15.33■□□□□ 0.05
COL6A3P12111 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
COL6A3P12111 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
COL6A3P12111 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.33■□□□□ 0.05
COL6A3P12111 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL6A3P12111 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
COL6A3P12111 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
COL6A3P12111 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A3P12111 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC15.33■□□□□ 0.04
COL6A3P12111 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.33■□□□□ 0.04
COL6A3P12111 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC15.33■□□□□ 0.04
COL6A3P12111 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A3P12111 CLPP-205ENST00000596605 646 ntTSL 2 BASIC15.33■□□□□ 0.04
COL6A3P12111 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
COL6A3P12111 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
COL6A3P12111 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A3P12111 TMBIM7P-202ENST00000641474 1516 ntBASIC15.33■□□□□ 0.04
COL6A3P12111 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A3P12111 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A3P12111 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A3P12111 SAP18P2-201ENST00000434334 459 ntBASIC15.33■□□□□ 0.04
COL6A3P12111 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms