Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC20.83■□□□□ 0.93
NPHP4O75161 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
NPHP4O75161 AC021016.3-201ENST00000608367 477 ntBASIC20.83■□□□□ 0.93
NPHP4O75161 AL118522.1-201ENST00000611368 560 ntBASIC20.83■□□□□ 0.93
NPHP4O75161 TP53-221ENST00000615910 1149 ntTSL 5 BASIC20.83■□□□□ 0.93
NPHP4O75161 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP4O75161 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP4O75161 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP4O75161 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.83■□□□□ 0.92
NPHP4O75161 BCL2-203ENST00000589955 5011 ntBASIC20.83■□□□□ 0.92
NPHP4O75161 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP4O75161 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP4O75161 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP4O75161 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.83■□□□□ 0.92
NPHP4O75161 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP4O75161 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP4O75161 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
NPHP4O75161 AGGF1P2-201ENST00000426656 2106 ntBASIC20.82■□□□□ 0.92
NPHP4O75161 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP4O75161 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP4O75161 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.82■□□□□ 0.92
NPHP4O75161 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
NPHP4O75161 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP4O75161 API5-202ENST00000420461 2009 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC20.82■□□□□ 0.92
NPHP4O75161 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 KRT8P1-201ENST00000557533 1207 ntBASIC20.82■□□□□ 0.92
NPHP4O75161 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
NPHP4O75161 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 AC012508.2-201ENST00000567613 1472 ntBASIC20.82■□□□□ 0.92
NPHP4O75161 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.82■□□□□ 0.92
NPHP4O75161 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP4O75161 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
NPHP4O75161 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP4O75161 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP4O75161 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP4O75161 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP4O75161 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP4O75161 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 AL359258.3-201ENST00000622910 2331 ntBASIC20.81■□□□□ 0.92
NPHP4O75161 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.81■□□□□ 0.92
NPHP4O75161 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 PTGER4P2-201ENST00000328411 252 ntBASIC20.81■□□□□ 0.92
NPHP4O75161 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 PTGER4P3-201ENST00000458150 252 ntBASIC20.81■□□□□ 0.92
NPHP4O75161 AC063952.3-201ENST00000467756 308 ntBASIC20.81■□□□□ 0.92
NPHP4O75161 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 TREHP1-201ENST00000531328 465 ntBASIC20.81■□□□□ 0.92
NPHP4O75161 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC20.81■□□□□ 0.92
NPHP4O75161 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 AC112504.1-201ENST00000623415 1841 ntBASIC20.81■□□□□ 0.92
NPHP4O75161 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPHP4O75161 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
NPHP4O75161 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC20.81■□□□□ 0.92
NPHP4O75161 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 SALL4P5-201ENST00000419001 1760 ntBASIC20.8■□□□□ 0.92
NPHP4O75161 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
NPHP4O75161 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC20.8■□□□□ 0.92
NPHP4O75161 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 CYP4F36P-201ENST00000589193 186 ntBASIC20.8■□□□□ 0.92
NPHP4O75161 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC20.8■□□□□ 0.92
NPHP4O75161 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP4O75161 CICP11-201ENST00000434745 2827 ntBASIC20.8■□□□□ 0.92
NPHP4O75161 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP4O75161 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.8■□□□□ 0.92
NPHP4O75161 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 LTB4R2-202ENST00000528054 3092 ntBASIC20.8■□□□□ 0.92
NPHP4O75161 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NPHP4O75161 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
NPHP4O75161 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms