Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
MMP28Q9H239 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
MMP28Q9H239 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.59□□□□□ -0.23
MMP28Q9H239 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
MMP28Q9H239 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.58□□□□□ -0.23
MMP28Q9H239 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.23
MMP28Q9H239 ACE3P-201ENST00000423435 1973 ntBASIC13.58□□□□□ -0.24
MMP28Q9H239 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.58□□□□□ -0.24
MMP28Q9H239 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.58□□□□□ -0.24
MMP28Q9H239 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 PMS2P4-201ENST00000412466 1052 ntBASIC13.58□□□□□ -0.24
MMP28Q9H239 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.58□□□□□ -0.24
MMP28Q9H239 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.58□□□□□ -0.24
MMP28Q9H239 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.58□□□□□ -0.24
MMP28Q9H239 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.58□□□□□ -0.24
MMP28Q9H239 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
MMP28Q9H239 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.58□□□□□ -0.24
MMP28Q9H239 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 AC021097.1-201ENST00000607902 574 ntBASIC13.58□□□□□ -0.24
MMP28Q9H239 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.58□□□□□ -0.24
MMP28Q9H239 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.58□□□□□ -0.24
MMP28Q9H239 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 AC134407.2-201ENST00000625089 1978 ntBASIC13.58□□□□□ -0.24
MMP28Q9H239 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.58□□□□□ -0.24
MMP28Q9H239 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
MMP28Q9H239 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
MMP28Q9H239 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
MMP28Q9H239 RELA-227ENST00000615805 2236 ntTSL 5 BASIC13.58□□□□□ -0.24
MMP28Q9H239 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
MMP28Q9H239 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
MMP28Q9H239 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.57□□□□□ -0.24
MMP28Q9H239 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.57□□□□□ -0.24
MMP28Q9H239 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 AC004832.2-201ENST00000426397 482 ntBASIC13.57□□□□□ -0.24
MMP28Q9H239 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.57□□□□□ -0.24
MMP28Q9H239 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.57□□□□□ -0.24
MMP28Q9H239 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms