Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 AC026471.1-201ENST00000564629 3026 ntBASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 MARK2P16-201ENST00000605714 1723 ntBASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 NSD1-211ENST00000511258 809 ntTSL 3 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 RN7SL277P-201ENST00000481521 288 ntBASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 AL157792.1-201ENST00000488281 530 ntBASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 NUDT4P2-201ENST00000578341 546 ntBASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHANK3Q9BYB0 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 RN7SL596P-201ENST00000582123 288 ntBASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 HLA-DQB1-202ENST00000399079 1501 ntBASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 LINC01815-202ENST00000641468 1409 ntBASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC19.12■□□□□ 0.65
SHANK3Q9BYB0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AL035414.1-201ENST00000451327 857 ntBASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC007326.1-201ENST00000604539 458 ntBASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 MVK-217ENST00000639206 367 ntTSL 5 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms