Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 AL358472.3-201ENST00000608147 415 ntBASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 PPT1-215ENST00000641471 2368 ntBASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AL354877.1-201ENST00000424412 413 ntBASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 CALR4P-201ENST00000431943 946 ntBASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 NKAIN1P1-201ENST00000435754 582 ntBASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AC091804.1-201ENST00000486888 567 ntBASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AC044849.1-201ENST00000519737 1188 ntBASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AC138696.2-201ENST00000607376 223 ntBASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AC007663.3-201ENST00000609632 465 ntBASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 AC126365.1-201ENST00000578585 1514 ntBASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PAAF1Q9BRP4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 AL162727.3-201ENST00000635661 2787 ntBASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 AC023090.2-201ENST00000625182 2110 ntBASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 BX284668.4-201ENST00000453917 508 ntBASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 AC126915.1-201ENST00000522847 1038 ntBASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 AC244452.3-201ENST00000636814 210 ntBASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 MROH4P-201ENST00000431302 1578 ntBASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms