Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 AL137783.1-201ENST00000623494 1896 ntBASIC11.81□□□□□ -0.52
CCDC140Q96MF4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 DGCR5-201ENST00000399539 862 ntBASIC11.81□□□□□ -0.52
CCDC140Q96MF4 AL139094.1-201ENST00000405549 1188 ntBASIC11.81□□□□□ -0.52
CCDC140Q96MF4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 AL162726.2-201ENST00000438986 1017 ntBASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 PAM16-204ENST00000571941 674 ntTSL 3 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 CU634019.7-201ENST00000624153 1185 ntBASIC11.81□□□□□ -0.52
CCDC140Q96MF4 FP236241.2-201ENST00000624906 1185 ntBASIC11.81□□□□□ -0.52
CCDC140Q96MF4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 PRSS30P-206ENST00000641773 873 ntBASIC11.81□□□□□ -0.52
CCDC140Q96MF4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 GSN-203ENST00000373808 2664 ntTSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 KRT8P14-201ENST00000414254 1442 ntBASIC11.8□□□□□ -0.52
CCDC140Q96MF4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC11.8□□□□□ -0.52
CCDC140Q96MF4 CLUHP6-201ENST00000580789 941 ntBASIC11.8□□□□□ -0.52
CCDC140Q96MF4 AC138761.1-201ENST00000584393 385 ntBASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms