Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MADD-201ENST00000311027 5990 ntAPPRIS P4 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 PARP3-202ENST00000417220 2472 ntAPPRIS P3 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 OPRK1-201ENST00000265572 5014 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 C2-209ENST00000452323 1999 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 NKAP-201ENST00000371410 5963 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 FGFR1-211ENST00000425967 5375 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 OFD1-203ENST00000380567 3736 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 CA10-202ENST00000442502 2935 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 Telomerase-vert.1-201ENST00000363312 438 ntBASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 DUSP5P2-201ENST00000426873 1033 ntBASIC9.45□□□□□ -0.9
LINC00643Q86TS7 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 AP002982.1-201ENST00000492365 877 ntBASIC9.45□□□□□ -0.9
LINC00643Q86TS7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 MIR3917-201ENST00000580971 93 ntBASIC9.45□□□□□ -0.9
LINC00643Q86TS7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TERC-201ENST00000602385 541 ntBASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 KRT16P1-201ENST00000399124 1418 ntBASIC9.45□□□□□ -0.9
LINC00643Q86TS7 CPT1A-205ENST00000539743 2382 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 SPART-203ENST00000451493 4944 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 AL358933.1-201ENST00000565046 2830 ntBASIC9.45□□□□□ -0.9
LINC00643Q86TS7 EDARADD-204ENST00000637660 2803 ntTSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 C15orf40-201ENST00000304177 11244 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 ZNF407-201ENST00000299687 7948 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 MMP23A-201ENST00000234610 1017 ntBASIC9.44□□□□□ -0.9
LINC00643Q86TS7 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC9.44□□□□□ -0.9
LINC00643Q86TS7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC9.44□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms