Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH6P52701 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH6P52701 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
MSH6P52701 LINC00634-202ENST00000505157 222 ntBASIC20.73■□□□□ 0.91
MSH6P52701 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH6P52701 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH6P52701 CMC2-224ENST00000630396 481 ntTSL 5 BASIC20.73■□□□□ 0.91
MSH6P52701 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
MSH6P52701 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
MSH6P52701 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
MSH6P52701 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.73■□□□□ 0.91
MSH6P52701 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH6P52701 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 GCSHP3-201ENST00000431120 391 ntBASIC20.72■□□□□ 0.91
MSH6P52701 AL157407.1-201ENST00000435784 904 ntBASIC20.72■□□□□ 0.91
MSH6P52701 RN7SL396P-201ENST00000471086 295 ntBASIC20.72■□□□□ 0.91
MSH6P52701 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC20.72■□□□□ 0.91
MSH6P52701 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC20.72■□□□□ 0.91
MSH6P52701 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC20.72■□□□□ 0.91
MSH6P52701 AL157414.3-201ENST00000624276 1954 ntBASIC20.72■□□□□ 0.91
MSH6P52701 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
MSH6P52701 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
MSH6P52701 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
MSH6P52701 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC20.72■□□□□ 0.91
MSH6P52701 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.72■□□□□ 0.91
MSH6P52701 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC20.72■□□□□ 0.91
MSH6P52701 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC20.72■□□□□ 0.91
MSH6P52701 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.72■□□□□ 0.91
MSH6P52701 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
MSH6P52701 SP100-205ENST00000409824 1802 ntTSL 5 BASIC20.72■□□□□ 0.91
MSH6P52701 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
MSH6P52701 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC20.72■□□□□ 0.91
MSH6P52701 AC006449.5-201ENST00000610658 2098 ntBASIC20.72■□□□□ 0.91
MSH6P52701 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
MSH6P52701 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC20.72■□□□□ 0.91
MSH6P52701 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH6P52701 AP000911.2-201ENST00000534330 502 ntBASIC20.72■□□□□ 0.91
MSH6P52701 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC20.72■□□□□ 0.91
MSH6P52701 CR383656.3-201ENST00000551315 183 ntBASIC20.72■□□□□ 0.91
MSH6P52701 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC20.72■□□□□ 0.91
MSH6P52701 AC005041.3-201ENST00000606287 649 ntBASIC20.72■□□□□ 0.91
MSH6P52701 AC009560.1-201ENST00000620208 434 ntBASIC20.72■□□□□ 0.91
MSH6P52701 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
MSH6P52701 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.71■□□□□ 0.91
MSH6P52701 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 AC144522.1-201ENST00000625111 1658 ntBASIC20.71■□□□□ 0.91
MSH6P52701 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.71■□□□□ 0.91
MSH6P52701 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC20.71■□□□□ 0.91
MSH6P52701 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MSH6P52701 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC20.71■□□□□ 0.91
MSH6P52701 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC20.71■□□□□ 0.91
MSH6P52701 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
MSH6P52701 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC20.71■□□□□ 0.91
MSH6P52701 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC20.71■□□□□ 0.91
MSH6P52701 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC20.71■□□□□ 0.91
MSH6P52701 DBP-202ENST00000593500 712 ntTSL 2 BASIC20.71■□□□□ 0.91
MSH6P52701 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC20.71■□□□□ 0.91
MSH6P52701 AC133540.1-201ENST00000620845 1019 ntBASIC20.71■□□□□ 0.91
MSH6P52701 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
MSH6P52701 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.91
MSH6P52701 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
MSH6P52701 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms