Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 HNRNPA1P36-201ENST00000521313 955 ntBASIC17.57■□□□□ 0.4
CTCFP49711 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 AC106820.3-201ENST00000561653 397 ntBASIC17.57■□□□□ 0.4
CTCFP49711 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC17.57■□□□□ 0.4
CTCFP49711 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CTCFP49711 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.57■□□□□ 0.4
CTCFP49711 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.57■□□□□ 0.4
CTCFP49711 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.57■□□□□ 0.4
CTCFP49711 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CTCFP49711 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.57■□□□□ 0.4
CTCFP49711 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.57■□□□□ 0.4
CTCFP49711 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.57■□□□□ 0.4
CTCFP49711 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
CTCFP49711 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.56■□□□□ 0.4
CTCFP49711 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CTCFP49711 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.56■□□□□ 0.4
CTCFP49711 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CTCFP49711 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CTCFP49711 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC17.56■□□□□ 0.4
CTCFP49711 AC023141.7-201ENST00000430646 407 ntBASIC17.56■□□□□ 0.4
CTCFP49711 HLA-DPA2-205ENST00000433582 733 ntBASIC17.56■□□□□ 0.4
CTCFP49711 AL645933.1-201ENST00000440087 609 ntBASIC17.56■□□□□ 0.4
CTCFP49711 AC092638.2-201ENST00000441105 947 ntBASIC17.56■□□□□ 0.4
CTCFP49711 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC17.56■□□□□ 0.4
CTCFP49711 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.56■□□□□ 0.4
CTCFP49711 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CTCFP49711 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.56■□□□□ 0.4
CTCFP49711 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC17.56■□□□□ 0.4
CTCFP49711 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC17.56■□□□□ 0.4
CTCFP49711 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC17.56■□□□□ 0.4
CTCFP49711 NAT9-220ENST00000582870 896 ntTSL 5 BASIC17.56■□□□□ 0.4
CTCFP49711 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC17.56■□□□□ 0.4
CTCFP49711 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CTCFP49711 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 ZNF436-AS1-201ENST00000335648 2547 ntBASIC17.56■□□□□ 0.4
CTCFP49711 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.56■□□□□ 0.4
CTCFP49711 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CTCFP49711 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.56■□□□□ 0.4
CTCFP49711 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 HYMAI-201ENST00000635591 3347 ntBASIC17.55■□□□□ 0.4
CTCFP49711 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CTCFP49711 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.55■□□□□ 0.4
CTCFP49711 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.55■□□□□ 0.4
CTCFP49711 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
CTCFP49711 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CTCFP49711 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.55■□□□□ 0.4
CTCFP49711 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CTCFP49711 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
CTCFP49711 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 AL627422.1-201ENST00000434104 580 ntBASIC17.55■□□□□ 0.4
CTCFP49711 AC004837.1-201ENST00000446267 564 ntBASIC17.55■□□□□ 0.4
CTCFP49711 RN7SL396P-201ENST00000471086 295 ntBASIC17.55■□□□□ 0.4
CTCFP49711 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC17.55■□□□□ 0.4
CTCFP49711 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC17.55■□□□□ 0.4
CTCFP49711 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC17.55■□□□□ 0.4
CTCFP49711 NUDT4P2-201ENST00000578341 546 ntBASIC17.55■□□□□ 0.4
CTCFP49711 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC17.55■□□□□ 0.4
CTCFP49711 AL109837.1-201ENST00000603272 613 ntBASIC17.55■□□□□ 0.4
CTCFP49711 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms