Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.64■□□□□ 0.25
VTNP04004 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VTNP04004 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.64■□□□□ 0.25
VTNP04004 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.64■□□□□ 0.25
VTNP04004 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.64■□□□□ 0.25
VTNP04004 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VTNP04004 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.64■□□□□ 0.25
VTNP04004 AP000845.1-201ENST00000581677 2131 ntBASIC16.64■□□□□ 0.25
VTNP04004 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VTNP04004 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 FKBP4P6-201ENST00000457486 1332 ntBASIC16.64■□□□□ 0.25
VTNP04004 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
VTNP04004 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTNP04004 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.63■□□□□ 0.25
VTNP04004 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.63■□□□□ 0.25
VTNP04004 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.63■□□□□ 0.25
VTNP04004 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.63■□□□□ 0.25
VTNP04004 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 MIR663B-201ENST00000408361 115 ntBASIC16.63■□□□□ 0.25
VTNP04004 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.63■□□□□ 0.25
VTNP04004 BCYRN1-201ENST00000418539 200 ntBASIC16.63■□□□□ 0.25
VTNP04004 AC079178.1-201ENST00000420915 656 ntBASIC16.63■□□□□ 0.25
VTNP04004 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.63■□□□□ 0.25
VTNP04004 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.63■□□□□ 0.25
VTNP04004 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.63■□□□□ 0.25
VTNP04004 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.63■□□□□ 0.25
VTNP04004 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 ZACNP1-201ENST00000612259 710 ntBASIC16.63■□□□□ 0.25
VTNP04004 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.63■□□□□ 0.25
VTNP04004 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
VTNP04004 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.63■□□□□ 0.25
VTNP04004 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.63■□□□□ 0.25
VTNP04004 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VTNP04004 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.63■□□□□ 0.25
VTNP04004 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VTNP04004 INE2-201ENST00000630399 1874 ntBASIC16.63■□□□□ 0.25
VTNP04004 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
VTNP04004 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VTNP04004 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.62■□□□□ 0.25
VTNP04004 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.62■□□□□ 0.25
VTNP04004 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.62■□□□□ 0.25
VTNP04004 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTNP04004 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTNP04004 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTNP04004 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.62■□□□□ 0.25
VTNP04004 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VTNP04004 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.62■□□□□ 0.25
VTNP04004 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTNP04004 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTNP04004 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VTNP04004 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.62■□□□□ 0.25
VTNP04004 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms