Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.05■□□□□ -0
VPS4BO75351 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ -0
VPS4BO75351 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.05■□□□□ -0
VPS4BO75351 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.05■□□□□ -0
VPS4BO75351 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.05■□□□□ -0
VPS4BO75351 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
VPS4BO75351 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 AL035456.1-201ENST00000456064 1369 ntBASIC15.04■□□□□ -0
VPS4BO75351 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 INE1-201ENST00000456273 945 ntBASIC15.04■□□□□ -0
VPS4BO75351 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.04■□□□□ -0
VPS4BO75351 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.04■□□□□ -0
VPS4BO75351 AC010336.2-201ENST00000564226 506 ntBASIC15.04■□□□□ -0
VPS4BO75351 AC105021.1-202ENST00000570572 669 ntBASIC15.04■□□□□ -0
VPS4BO75351 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.04■□□□□ -0
VPS4BO75351 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.04■□□□□ -0
VPS4BO75351 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VPS4BO75351 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.04■□□□□ -0
VPS4BO75351 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.04■□□□□ -0
VPS4BO75351 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 CICP11-201ENST00000434745 2827 ntBASIC15.03■□□□□ -0
VPS4BO75351 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.03■□□□□ -0
VPS4BO75351 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
VPS4BO75351 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
VPS4BO75351 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
VPS4BO75351 MIR658-201ENST00000385210 100 ntBASIC15.03■□□□□ -0
VPS4BO75351 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms