Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.08□□□□□ -0.32
SDCBPO00560 CNN2P11-201ENST00000429351 262 ntBASIC13.08□□□□□ -0.32
SDCBPO00560 GPS2P2-201ENST00000430745 888 ntBASIC13.08□□□□□ -0.32
SDCBPO00560 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.08□□□□□ -0.32
SDCBPO00560 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.08□□□□□ -0.32
SDCBPO00560 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.08□□□□□ -0.32
SDCBPO00560 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.08□□□□□ -0.32
SDCBPO00560 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.08□□□□□ -0.32
SDCBPO00560 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.08□□□□□ -0.32
SDCBPO00560 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.08□□□□□ -0.32
SDCBPO00560 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.08□□□□□ -0.32
SDCBPO00560 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
SDCBPO00560 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
SDCBPO00560 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
SDCBPO00560 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.08□□□□□ -0.32
SDCBPO00560 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SDCBPO00560 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.07□□□□□ -0.32
SDCBPO00560 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.07□□□□□ -0.32
SDCBPO00560 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
SDCBPO00560 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.07□□□□□ -0.32
SDCBPO00560 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.07□□□□□ -0.32
SDCBPO00560 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
SDCBPO00560 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.07□□□□□ -0.32
SDCBPO00560 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
SDCBPO00560 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
SDCBPO00560 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
SDCBPO00560 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
SDCBPO00560 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC13.07□□□□□ -0.32
SDCBPO00560 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.07□□□□□ -0.32
SDCBPO00560 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 AC004967.1-201ENST00000453589 447 ntBASIC13.07□□□□□ -0.32
SDCBPO00560 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC13.07□□□□□ -0.32
SDCBPO00560 MIR4453-201ENST00000584019 89 ntBASIC13.07□□□□□ -0.32
SDCBPO00560 RN7SL828P-201ENST00000607615 303 ntBASIC13.07□□□□□ -0.32
SDCBPO00560 AL596442.2-201ENST00000610240 980 ntBASIC13.07□□□□□ -0.32
SDCBPO00560 RAB34-224ENST00000636513 888 ntTSL 5 BASIC13.07□□□□□ -0.32
SDCBPO00560 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 AC134684.3-201ENST00000641758 218 ntBASIC13.07□□□□□ -0.32
SDCBPO00560 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.07□□□□□ -0.32
SDCBPO00560 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.07□□□□□ -0.32
SDCBPO00560 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SDCBPO00560 AC084364.1-201ENST00000551967 1556 ntBASIC13.07□□□□□ -0.32
SDCBPO00560 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.07□□□□□ -0.32
SDCBPO00560 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
SDCBPO00560 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
SDCBPO00560 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.06□□□□□ -0.32
SDCBPO00560 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms