Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXN3O00409 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXN3O00409 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXN3O00409 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.35■□□□□ 0.21
FOXN3O00409 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 AL137783.1-201ENST00000623494 1896 ntBASIC16.35■□□□□ 0.21
FOXN3O00409 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXN3O00409 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXN3O00409 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXN3O00409 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXN3O00409 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXN3O00409 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
FOXN3O00409 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
FOXN3O00409 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXN3O00409 AC005912.2-201ENST00000619492 2400 ntBASIC16.34■□□□□ 0.21
FOXN3O00409 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXN3O00409 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.34■□□□□ 0.21
FOXN3O00409 AC134915.1-201ENST00000426461 574 ntBASIC16.34■□□□□ 0.21
FOXN3O00409 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXN3O00409 DFFBP1-201ENST00000433250 979 ntBASIC16.34■□□□□ 0.21
FOXN3O00409 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXN3O00409 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.34■□□□□ 0.21
FOXN3O00409 RPL13AP25-201ENST00000484130 612 ntBASIC16.34■□□□□ 0.21
FOXN3O00409 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.34■□□□□ 0.21
FOXN3O00409 AC092552.1-201ENST00000547243 906 ntBASIC16.34■□□□□ 0.21
FOXN3O00409 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.34■□□□□ 0.21
FOXN3O00409 AC120045.2-201ENST00000567334 178 ntBASIC16.34■□□□□ 0.21
FOXN3O00409 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.34■□□□□ 0.21
FOXN3O00409 AC093726.1-201ENST00000608064 963 ntBASIC16.34■□□□□ 0.21
FOXN3O00409 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.34■□□□□ 0.21
FOXN3O00409 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXN3O00409 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.34■□□□□ 0.21
FOXN3O00409 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXN3O00409 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
FOXN3O00409 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXN3O00409 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXN3O00409 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
FOXN3O00409 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXN3O00409 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
FOXN3O00409 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
FOXN3O00409 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
FOXN3O00409 AC007541.1-201ENST00000570282 1469 ntBASIC16.34■□□□□ 0.21
FOXN3O00409 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXN3O00409 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
FOXN3O00409 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXN3O00409 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXN3O00409 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.33■□□□□ 0.21
FOXN3O00409 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.33■□□□□ 0.21
FOXN3O00409 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXN3O00409 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
FOXN3O00409 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXN3O00409 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.33■□□□□ 0.21
FOXN3O00409 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
FOXN3O00409 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.33■□□□□ 0.21
FOXN3O00409 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.21
FOXN3O00409 INTS4P2-202ENST00000614726 2019 ntBASIC16.33■□□□□ 0.21
FOXN3O00409 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.33■□□□□ 0.2
FOXN3O00409 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
FOXN3O00409 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 AL645937.2-201ENST00000396808 931 ntBASIC16.33■□□□□ 0.2
FOXN3O00409 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXN3O00409 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXN3O00409 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.33■□□□□ 0.2
FOXN3O00409 AC104596.2-201ENST00000512793 793 ntBASIC16.33■□□□□ 0.2
FOXN3O00409 AC123567.1-201ENST00000548294 1261 ntBASIC16.33■□□□□ 0.2
FOXN3O00409 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXN3O00409 AL359711.2-201ENST00000563105 872 ntBASIC16.33■□□□□ 0.2
FOXN3O00409 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.33■□□□□ 0.2
FOXN3O00409 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXN3O00409 RN7SL204P-201ENST00000582831 262 ntBASIC16.33■□□□□ 0.2
FOXN3O00409 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXN3O00409 PRSS30P-206ENST00000641773 873 ntBASIC16.33■□□□□ 0.2
FOXN3O00409 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
FOXN3O00409 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXN3O00409 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms