Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 AC104794.3-201ENST00000566840 1248 ntBASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 AL390955.2-201ENST00000603032 514 ntBASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 LILRP1-201ENST00000444199 1370 ntBASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
VPS29Q9UBQ0 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AL360270.3-201ENST00000609118 1348 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 FAM86LP-201ENST00000478302 853 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 DOC2GP-202ENST00000514950 1163 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 TPRX2P-201ENST00000535362 881 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 AL009178.2-201ENST00000597278 2719 ntBASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS29Q9UBQ0 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 DRD5P1-201ENST00000456605 1438 ntBASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms