Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PTCHD1Q96NR3 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 AC006486.2-201ENST00000624246 2199 ntBASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 TMEM14DP-201ENST00000422205 345 ntBASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 SAMD11P1-201ENST00000571429 661 ntBASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 MIR5189-201ENST00000577370 114 ntBASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 AC008735.3-201ENST00000596646 500 ntBASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 RPSAP52-203ENST00000622976 1023 ntBASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
PTCHD1Q96NR3 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 AC007787.1-201ENST00000588095 1583 ntBASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 ACKR1-201ENST00000368121 1240 ntBASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 BAATP1-201ENST00000412284 1225 ntBASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 NUS1P3-201ENST00000423502 862 ntBASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 AC068587.3-201ENST00000526613 355 ntBASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 SLC25A47P1-201ENST00000531577 414 ntBASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 MYO15B-237ENST00000642007 4893 ntBASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms