Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AC004898.1-201ENST00000451057 766 ntBASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AC091804.1-201ENST00000486888 567 ntBASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 ACTG1P17-201ENST00000558391 1119 ntBASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AC015967.2-201ENST00000624092 234 ntBASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AC006435.4-201ENST00000625037 234 ntBASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AL356737.1-201ENST00000634391 234 ntBASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AC092850.2-201ENST00000623821 2697 ntBASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDDC3Q8N4P3 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AL365203.3-201ENST00000609742 2057 ntBASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AC005077.2-201ENST00000449786 690 ntBASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AL591846.1-201ENST00000451736 433 ntBASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AC022616.1-201ENST00000518688 554 ntBASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AC104982.3-201ENST00000581995 514 ntBASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDDC3Q8N4P3 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms