Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
NPHP3Q7Z494 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 KRT18P9-201ENST00000604826 1300 ntBASIC20.35■□□□□ 0.85
NPHP3Q7Z494 AL645933.1-201ENST00000440087 609 ntBASIC20.35■□□□□ 0.85
NPHP3Q7Z494 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 RN7SL81P-201ENST00000493781 261 ntBASIC20.35■□□□□ 0.85
NPHP3Q7Z494 NSD1-211ENST00000511258 809 ntTSL 3 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 MIR3188-201ENST00000583494 85 ntBASIC20.35■□□□□ 0.85
NPHP3Q7Z494 AC005618.3-201ENST00000624928 458 ntBASIC20.35■□□□□ 0.85
NPHP3Q7Z494 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 AC092364.2-201ENST00000596710 2692 ntBASIC20.35■□□□□ 0.85
NPHP3Q7Z494 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.35■□□□□ 0.85
NPHP3Q7Z494 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 Z69890.1-201ENST00000382990 339 ntBASIC20.34■□□□□ 0.85
NPHP3Q7Z494 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 REEP5-205ENST00000504247 480 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 FO393412.1-201ENST00000619841 382 ntBASIC20.34■□□□□ 0.85
NPHP3Q7Z494 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 AC133540.1-201ENST00000620845 1019 ntBASIC20.34■□□□□ 0.85
NPHP3Q7Z494 AC138466.4-201ENST00000623965 852 ntBASIC20.34■□□□□ 0.85
NPHP3Q7Z494 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 CYP4F23P-201ENST00000593402 1579 ntBASIC20.34■□□□□ 0.85
NPHP3Q7Z494 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NPHP3Q7Z494 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 SERF2-206ENST00000409291 807 ntTSL 3 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 CICP12-201ENST00000455801 843 ntBASIC20.33■□□□□ 0.85
NPHP3Q7Z494 ALG1L6P-201ENST00000515248 758 ntBASIC20.33■□□□□ 0.85
NPHP3Q7Z494 AP003398.1-201ENST00000531124 318 ntBASIC20.33■□□□□ 0.85
NPHP3Q7Z494 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.33■□□□□ 0.85
NPHP3Q7Z494 AC112504.1-201ENST00000623415 1841 ntBASIC20.33■□□□□ 0.84
NPHP3Q7Z494 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 AC090502.4-201ENST00000551714 1386 ntBASIC20.33■□□□□ 0.84
NPHP3Q7Z494 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms