Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.43■□□□□ 0.38
SMARCA1P28370 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SMARCA1P28370 MPV17-205ENST00000402310 906 ntTSL 5 BASIC17.43■□□□□ 0.38
SMARCA1P28370 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 FAM8A4P-201ENST00000435433 1213 ntBASIC17.43■□□□□ 0.38
SMARCA1P28370 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.43■□□□□ 0.38
SMARCA1P28370 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.43■□□□□ 0.38
SMARCA1P28370 AL590640.2-201ENST00000457038 527 ntBASIC17.43■□□□□ 0.38
SMARCA1P28370 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SMARCA1P28370 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.43■□□□□ 0.38
SMARCA1P28370 AC106820.3-201ENST00000561653 397 ntBASIC17.43■□□□□ 0.38
SMARCA1P28370 C2orf69P2-201ENST00000562032 1123 ntBASIC17.43■□□□□ 0.38
SMARCA1P28370 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.43■□□□□ 0.38
SMARCA1P28370 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.43■□□□□ 0.38
SMARCA1P28370 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.43■□□□□ 0.38
SMARCA1P28370 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SMARCA1P28370 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SMARCA1P28370 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.43■□□□□ 0.38
SMARCA1P28370 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.43■□□□□ 0.38
SMARCA1P28370 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SMARCA1P28370 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SMARCA1P28370 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.42■□□□□ 0.38
SMARCA1P28370 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.42■□□□□ 0.38
SMARCA1P28370 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.42■□□□□ 0.38
SMARCA1P28370 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
SMARCA1P28370 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SMARCA1P28370 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.42■□□□□ 0.38
SMARCA1P28370 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SMARCA1P28370 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.42■□□□□ 0.38
SMARCA1P28370 AC099336.1-201ENST00000417053 1171 ntBASIC17.42■□□□□ 0.38
SMARCA1P28370 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.42■□□□□ 0.38
SMARCA1P28370 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.42■□□□□ 0.38
SMARCA1P28370 RNA5SP412-201ENST00000516234 123 ntBASIC17.42■□□□□ 0.38
SMARCA1P28370 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.42■□□□□ 0.38
SMARCA1P28370 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
SMARCA1P28370 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.42■□□□□ 0.38
SMARCA1P28370 AC138696.2-201ENST00000607376 223 ntBASIC17.42■□□□□ 0.38
SMARCA1P28370 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SMARCA1P28370 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SMARCA1P28370 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SMARCA1P28370 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMARCA1P28370 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.42■□□□□ 0.38
SMARCA1P28370 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SMARCA1P28370 FER1L4-210ENST00000615531 5998 ntBASIC17.41■□□□□ 0.38
SMARCA1P28370 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.41■□□□□ 0.38
SMARCA1P28370 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
SMARCA1P28370 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.41■□□□□ 0.38
SMARCA1P28370 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.41■□□□□ 0.38
SMARCA1P28370 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.41■□□□□ 0.38
SMARCA1P28370 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.41■□□□□ 0.38
SMARCA1P28370 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.41■□□□□ 0.38
SMARCA1P28370 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.41■□□□□ 0.38
SMARCA1P28370 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.41■□□□□ 0.38
SMARCA1P28370 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.41■□□□□ 0.38
SMARCA1P28370 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SMARCA1P28370 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.41■□□□□ 0.38
SMARCA1P28370 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SMARCA1P28370 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SMARCA1P28370 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SMARCA1P28370 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.41■□□□□ 0.38
SMARCA1P28370 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMARCA1P28370 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms