Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
NPHP1O15259 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
NPHP1O15259 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.27■□□□□ 0.68
NPHP1O15259 ATP6V0CP2-201ENST00000469409 207 ntBASIC19.27■□□□□ 0.68
NPHP1O15259 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
NPHP1O15259 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.27■□□□□ 0.68
NPHP1O15259 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.27■□□□□ 0.68
NPHP1O15259 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC19.27■□□□□ 0.68
NPHP1O15259 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
NPHP1O15259 KLK3-207ENST00000595952 969 ntTSL 3 BASIC19.27■□□□□ 0.68
NPHP1O15259 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.27■□□□□ 0.68
NPHP1O15259 AC016629.1-201ENST00000596579 586 ntBASIC19.27■□□□□ 0.68
NPHP1O15259 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.27■□□□□ 0.68
NPHP1O15259 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
NPHP1O15259 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
NPHP1O15259 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
NPHP1O15259 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPHP1O15259 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPHP1O15259 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPHP1O15259 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
NPHP1O15259 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NPHP1O15259 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.26■□□□□ 0.67
NPHP1O15259 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
NPHP1O15259 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.26■□□□□ 0.67
NPHP1O15259 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19.26■□□□□ 0.67
NPHP1O15259 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.26■□□□□ 0.67
NPHP1O15259 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
NPHP1O15259 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
NPHP1O15259 PPY2P-201ENST00000582808 702 ntBASIC19.26■□□□□ 0.67
NPHP1O15259 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.26■□□□□ 0.67
NPHP1O15259 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.26■□□□□ 0.67
NPHP1O15259 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPHP1O15259 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
NPHP1O15259 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 ANKRD30BP2-201ENST00000435744 1610 ntBASIC19.25■□□□□ 0.67
NPHP1O15259 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
NPHP1O15259 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NPHP1O15259 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NPHP1O15259 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.25■□□□□ 0.67
NPHP1O15259 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC19.25■□□□□ 0.67
NPHP1O15259 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.25■□□□□ 0.67
NPHP1O15259 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 AL133466.1-201ENST00000447582 150 ntBASIC19.25■□□□□ 0.67
NPHP1O15259 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC19.25■□□□□ 0.67
NPHP1O15259 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
NPHP1O15259 CU633904.3-201ENST00000624042 1029 ntBASIC19.25■□□□□ 0.67
NPHP1O15259 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.25■□□□□ 0.67
NPHP1O15259 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
NPHP1O15259 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.25■□□□□ 0.67
NPHP1O15259 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.25■□□□□ 0.67
NPHP1O15259 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPHP1O15259 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
NPHP1O15259 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.25■□□□□ 0.67
NPHP1O15259 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.24■□□□□ 0.67
NPHP1O15259 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPHP1O15259 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
NPHP1O15259 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms