Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 KRT8P14-201ENST00000414254 1442 ntBASIC16.36■□□□□ 0.21
SIX2Q9NPC8 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 BX640514.1-201ENST00000583223 1918 ntBASIC16.35■□□□□ 0.21
SIX2Q9NPC8 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 AC139749.1-202ENST00000617529 3139 ntBASIC16.35■□□□□ 0.21
SIX2Q9NPC8 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.35■□□□□ 0.21
SIX2Q9NPC8 API5-211ENST00000534695 560 ntTSL 5 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 AC008761.3-201ENST00000624803 892 ntBASIC16.35■□□□□ 0.21
SIX2Q9NPC8 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 AC018665.1-201ENST00000622927 1362 ntBASIC16.35■□□□□ 0.21
SIX2Q9NPC8 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX2Q9NPC8 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 NUS1P3-201ENST00000423502 862 ntBASIC16.34■□□□□ 0.21
SIX2Q9NPC8 BCRP1-201ENST00000444246 691 ntBASIC16.34■□□□□ 0.21
SIX2Q9NPC8 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 AP001582.1-201ENST00000525856 295 ntBASIC16.34■□□□□ 0.21
SIX2Q9NPC8 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 TMEM261P1-201ENST00000604899 340 ntBASIC16.34■□□□□ 0.21
SIX2Q9NPC8 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 AC005252.2-201ENST00000624630 1141 ntBASIC16.34■□□□□ 0.21
SIX2Q9NPC8 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.34■□□□□ 0.21
SIX2Q9NPC8 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 AC007541.1-201ENST00000570282 1469 ntBASIC16.34■□□□□ 0.21
SIX2Q9NPC8 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms