Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 AC013726.1-201ENST00000563747 2285 ntBASIC14.76□□□□□ -0.05
VMP1Q96GC9 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 PIN1P1-201ENST00000412108 996 ntBASIC14.76□□□□□ -0.05
VMP1Q96GC9 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 DOC2GP-202ENST00000514950 1163 ntBASIC14.76□□□□□ -0.05
VMP1Q96GC9 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 TIMM17BP1-201ENST00000545713 516 ntBASIC14.76□□□□□ -0.05
VMP1Q96GC9 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 LINC02084-201ENST00000606069 1096 ntBASIC14.76□□□□□ -0.05
VMP1Q96GC9 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.76□□□□□ -0.05
VMP1Q96GC9 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.76□□□□□ -0.05
VMP1Q96GC9 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
VMP1Q96GC9 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 AC136604.1-201ENST00000418535 575 ntBASIC14.75□□□□□ -0.05
VMP1Q96GC9 TARDBPP1-201ENST00000442013 1203 ntBASIC14.75□□□□□ -0.05
VMP1Q96GC9 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 AC092337.1-201ENST00000568699 1129 ntBASIC14.75□□□□□ -0.05
VMP1Q96GC9 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 SRD5A3P1-201ENST00000603021 949 ntBASIC14.75□□□□□ -0.05
VMP1Q96GC9 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VMP1Q96GC9 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.75□□□□□ -0.05
VMP1Q96GC9 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 AC005840.4-201ENST00000541242 2494 ntBASIC14.74□□□□□ -0.05
VMP1Q96GC9 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms