Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.31■□□□□ 0.52
CHMP4CQ96CF2 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 AC015910.1-201ENST00000579400 975 ntBASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHMP4CQ96CF2 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 CROCCP4-201ENST00000457096 498 ntBASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 AC011495.1-201ENST00000498085 584 ntBASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 AL049840.4-201ENST00000602422 811 ntBASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 TMEM261P1-201ENST00000604899 340 ntBASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 MROH4P-201ENST00000431302 1578 ntBASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 AC104581.4-201ENST00000623126 3052 ntBASIC18.29■□□□□ 0.52
CHMP4CQ96CF2 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHMP4CQ96CF2 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 156.7 ms