Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 RN7SL81P-201ENST00000493781 261 ntBASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 PHBP15-201ENST00000574228 665 ntBASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 RN7SL470P-201ENST00000583069 259 ntBASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 MBLAC2-202ENST00000514906 1936 ntBASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 AC004554.1-201ENST00000422830 1468 ntBASIC17.95■□□□□ 0.46
SMC1BQ8NDV3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM90A21P-201ENST00000510875 1396 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM90A15P-201ENST00000514465 1395 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM90A6P-201ENST00000515148 1394 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM90A16P-201ENST00000526662 1395 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM90A9P-201ENST00000527940 1395 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM90A5P-201ENST00000528738 1395 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM90A14P-201ENST00000530386 1395 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM90A13P-201ENST00000534703 1395 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 NCR3-202ENST00000376071 541 ntTSL 5 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 AC010141.1-201ENST00000411585 623 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 LINC00634-202ENST00000505157 222 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 MIR3180-2-201ENST00000581748 88 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 SIGLEC18P-201ENST00000602271 909 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 PEBP1P2-201ENST00000603980 558 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 AL391005.1-201ENST00000623953 2435 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 AL008718.2-201ENST00000609206 1313 ntBASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SMC1BQ8NDV3 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 AC018892.3-201ENST00000623986 2499 ntBASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SMC1BQ8NDV3 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms