Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AL138799.1-201ENST00000448213 1675 ntBASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NUP54Q7Z3B4 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 NME2P1-201ENST00000426182 414 ntBASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 CU634019.7-201ENST00000624153 1185 ntBASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 FP236241.2-201ENST00000624906 1185 ntBASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
NUP54Q7Z3B4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 NUS1P3-201ENST00000423502 862 ntBASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms