Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.28■□□□□ 0.04
MSH3P20585 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.28■□□□□ 0.04
MSH3P20585 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 AL035633.1-201ENST00000406139 838 ntBASIC15.28■□□□□ 0.04
MSH3P20585 SOCS2P1-201ENST00000417727 557 ntBASIC15.28■□□□□ 0.04
MSH3P20585 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.28■□□□□ 0.04
MSH3P20585 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.28■□□□□ 0.04
MSH3P20585 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.28■□□□□ 0.04
MSH3P20585 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.28■□□□□ 0.04
MSH3P20585 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.28■□□□□ 0.04
MSH3P20585 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.28■□□□□ 0.04
MSH3P20585 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.28■□□□□ 0.04
MSH3P20585 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
MSH3P20585 AL645728.2-202ENST00000641679 227 ntBASIC15.28■□□□□ 0.04
MSH3P20585 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.28■□□□□ 0.04
MSH3P20585 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.28■□□□□ 0.04
MSH3P20585 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
MSH3P20585 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.27■□□□□ 0.04
MSH3P20585 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
MSH3P20585 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.27■□□□□ 0.04
MSH3P20585 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.27■□□□□ 0.04
MSH3P20585 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.27■□□□□ 0.04
MSH3P20585 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
MSH3P20585 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
MSH3P20585 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.27■□□□□ 0.04
MSH3P20585 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
MSH3P20585 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
MSH3P20585 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 AC098614.1-201ENST00000368528 745 ntBASIC15.27■□□□□ 0.04
MSH3P20585 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 COX20P2-201ENST00000452636 358 ntBASIC15.27■□□□□ 0.04
MSH3P20585 AC004066.1-201ENST00000502488 802 ntBASIC15.27■□□□□ 0.04
MSH3P20585 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.27■□□□□ 0.04
MSH3P20585 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.27■□□□□ 0.04
MSH3P20585 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.27■□□□□ 0.04
MSH3P20585 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
MSH3P20585 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.27■□□□□ 0.04
MSH3P20585 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.27■□□□□ 0.04
MSH3P20585 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.27■□□□□ 0.04
MSH3P20585 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSH3P20585 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.27■□□□□ 0.04
MSH3P20585 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.27■□□□□ 0.04
MSH3P20585 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.27■□□□□ 0.04
MSH3P20585 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.27■□□□□ 0.04
MSH3P20585 LINC02084-201ENST00000606069 1096 ntBASIC15.27■□□□□ 0.04
MSH3P20585 WFDC1-204ENST00000613603 549 ntBASIC15.27■□□□□ 0.04
MSH3P20585 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
MSH3P20585 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.27■□□□□ 0.04
MSH3P20585 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
MSH3P20585 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
MSH3P20585 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
MSH3P20585 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSH3P20585 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MSH3P20585 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
MSH3P20585 AL365209.1-201ENST00000624418 6473 ntBASIC15.27■□□□□ 0.03
MSH3P20585 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.27■□□□□ 0.03
MSH3P20585 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.27■□□□□ 0.03
MSH3P20585 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSH3P20585 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MSH3P20585 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
MSH3P20585 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
MSH3P20585 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MSH3P20585 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
MSH3P20585 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
MSH3P20585 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.26■□□□□ 0.03
MSH3P20585 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
MSH3P20585 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.26■□□□□ 0.03
MSH3P20585 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
MSH3P20585 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms