Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC19.82■□□□□ 0.76
COL3A1P02461 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC19.82■□□□□ 0.76
COL3A1P02461 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC19.82■□□□□ 0.76
COL3A1P02461 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC19.82■□□□□ 0.76
COL3A1P02461 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
COL3A1P02461 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.82■□□□□ 0.76
COL3A1P02461 HNRNPA1P63-201ENST00000427917 963 ntBASIC19.82■□□□□ 0.76
COL3A1P02461 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 CICP12-201ENST00000455801 843 ntBASIC19.82■□□□□ 0.76
COL3A1P02461 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC19.82■□□□□ 0.76
COL3A1P02461 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
COL3A1P02461 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC19.82■□□□□ 0.76
COL3A1P02461 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC19.82■□□□□ 0.76
COL3A1P02461 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC19.82■□□□□ 0.76
COL3A1P02461 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC19.82■□□□□ 0.76
COL3A1P02461 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
COL3A1P02461 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL3A1P02461 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC19.82■□□□□ 0.76
COL3A1P02461 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.81■□□□□ 0.76
COL3A1P02461 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL3A1P02461 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 NDUFAB1P1-201ENST00000404262 460 ntBASIC19.81■□□□□ 0.76
COL3A1P02461 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC19.81■□□□□ 0.76
COL3A1P02461 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.81■□□□□ 0.76
COL3A1P02461 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC19.81■□□□□ 0.76
COL3A1P02461 SERPINA13P-202ENST00000478994 924 ntBASIC19.81■□□□□ 0.76
COL3A1P02461 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.81■□□□□ 0.76
COL3A1P02461 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC19.81■□□□□ 0.76
COL3A1P02461 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC19.81■□□□□ 0.76
COL3A1P02461 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC19.81■□□□□ 0.76
COL3A1P02461 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL3A1P02461 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC19.81■□□□□ 0.76
COL3A1P02461 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.8■□□□□ 0.76
COL3A1P02461 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 AK6-201ENST00000380818 1183 ntTSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 VDAC1P1-201ENST00000439229 848 ntBASIC19.8■□□□□ 0.76
COL3A1P02461 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 AC005324.6-201ENST00000587972 613 ntBASIC19.8■□□□□ 0.76
COL3A1P02461 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
COL3A1P02461 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 BNIP3P13-201ENST00000599968 566 ntBASIC19.8■□□□□ 0.76
COL3A1P02461 AL451050.2-201ENST00000606967 682 ntBASIC19.8■□□□□ 0.76
COL3A1P02461 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC19.8■□□□□ 0.76
COL3A1P02461 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
COL3A1P02461 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL3A1P02461 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL3A1P02461 AL157407.1-201ENST00000435784 904 ntBASIC19.79■□□□□ 0.76
COL3A1P02461 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC19.79■□□□□ 0.76
COL3A1P02461 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 DUX4L46-201ENST00000566845 751 ntBASIC19.79■□□□□ 0.76
COL3A1P02461 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
COL3A1P02461 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
COL3A1P02461 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms