Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDH9Q9HC56 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDH9Q9HC56 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDH9Q9HC56 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDH9Q9HC56 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDH9Q9HC56 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDH9Q9HC56 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDH9Q9HC56 MTX2-204ENST00000443241 799 ntTSL 3 BASIC23.86■■□□□ 1.41
PCDH9Q9HC56 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PCDH9Q9HC56 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 AC010980.1-201ENST00000587192 1142 ntBASIC23.85■■□□□ 1.41
PCDH9Q9HC56 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDH9Q9HC56 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PCDH9Q9HC56 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.84■■□□□ 1.41
PCDH9Q9HC56 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
PCDH9Q9HC56 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.84■■□□□ 1.41
PCDH9Q9HC56 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDH9Q9HC56 AC019171.1-201ENST00000601251 1056 ntBASIC23.84■■□□□ 1.41
PCDH9Q9HC56 DUSP8P5-201ENST00000422884 1815 ntBASIC23.84■■□□□ 1.41
PCDH9Q9HC56 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDH9Q9HC56 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDH9Q9HC56 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH9Q9HC56 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 PVT1_1.1-201ENST00000615125 194 ntBASIC23.82■■□□□ 1.4
PCDH9Q9HC56 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDH9Q9HC56 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDH9Q9HC56 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
PCDH9Q9HC56 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.81■■□□□ 1.4
PCDH9Q9HC56 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDH9Q9HC56 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PCDH9Q9HC56 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDH9Q9HC56 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDH9Q9HC56 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PCDH9Q9HC56 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 AC012676.1-201ENST00000574705 1949 ntBASIC23.8■■□□□ 1.4
PCDH9Q9HC56 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
PCDH9Q9HC56 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 AL592295.1-201ENST00000400984 884 ntBASIC23.79■■□□□ 1.4
PCDH9Q9HC56 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH9Q9HC56 AC133561.1-201ENST00000568600 2415 ntBASIC23.79■■□□□ 1.4
PCDH9Q9HC56 AC068473.5-201ENST00000616428 2072 ntBASIC23.79■■□□□ 1.4
PCDH9Q9HC56 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.78■■□□□ 1.4
PCDH9Q9HC56 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms