Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 TSPY9P-201ENST00000440215 945 ntBASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 TSPY11P-201ENST00000442607 1045 ntBASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD1Q96NR3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTCHD1Q96NR3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTCHD1Q96NR3 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.74■■□□□ 1.07
PTCHD1Q96NR3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PTCHD1Q96NR3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.74■■□□□ 1.07
PTCHD1Q96NR3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.74■■□□□ 1.07
PTCHD1Q96NR3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.74■■□□□ 1.07
PTCHD1Q96NR3 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.74■■□□□ 1.07
PTCHD1Q96NR3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 HLA-L-211ENST00000482052 1765 ntBASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD1Q96NR3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD1Q96NR3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD1Q96NR3 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.72■■□□□ 1.07
PTCHD1Q96NR3 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD1Q96NR3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD1Q96NR3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD1Q96NR3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 UNC93B8-201ENST00000511903 705 ntBASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.71■■□□□ 1.07
PTCHD1Q96NR3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
PTCHD1Q96NR3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD1Q96NR3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 AL356441.2-201ENST00000443009 864 ntBASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 MTDHP2-201ENST00000601468 714 ntBASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD1Q96NR3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD1Q96NR3 KRT16P3-201ENST00000439127 1283 ntBASIC21.67■■□□□ 1.06
PTCHD1Q96NR3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.67■■□□□ 1.06
PTCHD1Q96NR3 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.67■■□□□ 1.06
PTCHD1Q96NR3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.67■■□□□ 1.06
PTCHD1Q96NR3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD1Q96NR3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD1Q96NR3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD1Q96NR3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms