Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
DDX53Q86TM3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DDX53Q86TM3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC24.68■■□□□ 1.54
DDX53Q86TM3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DDX53Q86TM3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
DDX53Q86TM3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
DDX53Q86TM3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DDX53Q86TM3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
DDX53Q86TM3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
DDX53Q86TM3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DDX53Q86TM3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.67■■□□□ 1.54
DDX53Q86TM3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.67■■□□□ 1.54
DDX53Q86TM3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC24.67■■□□□ 1.54
DDX53Q86TM3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 DUX4L19-201ENST00000557448 1267 ntBASIC24.67■■□□□ 1.54
DDX53Q86TM3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
DDX53Q86TM3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
DDX53Q86TM3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
DDX53Q86TM3 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.67■■□□□ 1.54
DDX53Q86TM3 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.67■■□□□ 1.54
DDX53Q86TM3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DDX53Q86TM3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC24.66■■□□□ 1.54
DDX53Q86TM3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
DDX53Q86TM3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX53Q86TM3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX53Q86TM3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DDX53Q86TM3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC24.66■■□□□ 1.54
DDX53Q86TM3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DDX53Q86TM3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX53Q86TM3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX53Q86TM3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX53Q86TM3 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
DDX53Q86TM3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX53Q86TM3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
DDX53Q86TM3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.65■■□□□ 1.54
DDX53Q86TM3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
DDX53Q86TM3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
DDX53Q86TM3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
DDX53Q86TM3 AC131274.2-201ENST00000580697 1507 ntBASIC24.65■■□□□ 1.54
DDX53Q86TM3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX53Q86TM3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.65■■□□□ 1.54
DDX53Q86TM3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
DDX53Q86TM3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
DDX53Q86TM3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
DDX53Q86TM3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
DDX53Q86TM3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.64■■□□□ 1.54
DDX53Q86TM3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC24.64■■□□□ 1.54
DDX53Q86TM3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX53Q86TM3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
DDX53Q86TM3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC24.64■■□□□ 1.53
DDX53Q86TM3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
DDX53Q86TM3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
DDX53Q86TM3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.63■■□□□ 1.53
DDX53Q86TM3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.63■■□□□ 1.53
DDX53Q86TM3 RARRES2P6-201ENST00000567333 442 ntBASIC24.63■■□□□ 1.53
DDX53Q86TM3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.63■■□□□ 1.53
DDX53Q86TM3 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.63■■□□□ 1.53
DDX53Q86TM3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
DDX53Q86TM3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24.62■■□□□ 1.53
DDX53Q86TM3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX53Q86TM3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX53Q86TM3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX53Q86TM3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
DDX53Q86TM3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX53Q86TM3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
DDX53Q86TM3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX53Q86TM3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
DDX53Q86TM3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.61■■□□□ 1.53
DDX53Q86TM3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX53Q86TM3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.61■■□□□ 1.53
DDX53Q86TM3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.61■■□□□ 1.53
DDX53Q86TM3 AC092171.4-201ENST00000609130 632 ntBASIC24.61■■□□□ 1.53
DDX53Q86TM3 AL136967.2-201ENST00000623968 743 ntBASIC24.61■■□□□ 1.53
DDX53Q86TM3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
DDX53Q86TM3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX53Q86TM3 AL121749.1-202ENST00000609313 2153 ntBASIC24.6■■□□□ 1.53
DDX53Q86TM3 SLC6A10P-202ENST00000431994 2058 ntBASIC24.6■■□□□ 1.53
DDX53Q86TM3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX53Q86TM3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX53Q86TM3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.6■■□□□ 1.53
DDX53Q86TM3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.6■■□□□ 1.53
DDX53Q86TM3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.6■■□□□ 1.53
DDX53Q86TM3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX53Q86TM3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
DDX53Q86TM3 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.6■■□□□ 1.53
DDX53Q86TM3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX53Q86TM3 GRAMD4P4-201ENST00000613563 1115 ntBASIC24.59■■□□□ 1.53
DDX53Q86TM3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
DDX53Q86TM3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms