Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC091305.1-201ENST00000479476 895 ntBASIC25.88■■□□□ 1.73
NKX3-2P78367 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.88■■□□□ 1.73
NKX3-2P78367 MIR5787-201ENST00000611784 55 ntBASIC25.88■■□□□ 1.73
NKX3-2P78367 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.88■■□□□ 1.73
NKX3-2P78367 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
NKX3-2P78367 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC25.87■■□□□ 1.73
NKX3-2P78367 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
NKX3-2P78367 AC131274.2-201ENST00000580697 1507 ntBASIC25.87■■□□□ 1.73
NKX3-2P78367 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
NKX3-2P78367 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.86■■□□□ 1.73
NKX3-2P78367 REST-206ENST00000612429 1376 ntTSL 5 BASIC25.86■■□□□ 1.73
NKX3-2P78367 REST-207ENST00000616975 1370 ntTSL 5 BASIC25.86■■□□□ 1.73
NKX3-2P78367 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NKX3-2P78367 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NKX3-2P78367 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NKX3-2P78367 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NKX3-2P78367 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NKX3-2P78367 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX3-2P78367 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NKX3-2P78367 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX3-2P78367 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.85■■□□□ 1.73
NKX3-2P78367 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NKX3-2P78367 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.85■■□□□ 1.73
NKX3-2P78367 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NKX3-2P78367 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC25.85■■□□□ 1.73
NKX3-2P78367 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC25.85■■□□□ 1.73
NKX3-2P78367 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
NKX3-2P78367 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX3-2P78367 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.85■■□□□ 1.73
NKX3-2P78367 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.85■■□□□ 1.73
NKX3-2P78367 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NKX3-2P78367 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.84■■□□□ 1.73
NKX3-2P78367 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.84■■□□□ 1.73
NKX3-2P78367 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NKX3-2P78367 SYT6-210ENST00000641643 1587 ntBASIC25.84■■□□□ 1.73
NKX3-2P78367 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NKX3-2P78367 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.83■■□□□ 1.73
NKX3-2P78367 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.83■■□□□ 1.73
NKX3-2P78367 MIR6821-201ENST00000617625 74 ntBASIC25.83■■□□□ 1.73
NKX3-2P78367 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.83■■□□□ 1.73
NKX3-2P78367 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
NKX3-2P78367 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NKX3-2P78367 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NKX3-2P78367 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
NKX3-2P78367 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.72
NKX3-2P78367 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NKX3-2P78367 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
NKX3-2P78367 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.82■■□□□ 1.72
NKX3-2P78367 AC104564.3-201ENST00000582367 638 ntBASIC25.82■■□□□ 1.72
NKX3-2P78367 AL138724.1-201ENST00000606771 1088 ntBASIC25.82■■□□□ 1.72
NKX3-2P78367 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NKX3-2P78367 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.82■■□□□ 1.72
NKX3-2P78367 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NKX3-2P78367 MIR4767-201ENST00000582827 78 ntBASIC25.81■■□□□ 1.72
NKX3-2P78367 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.81■■□□□ 1.72
NKX3-2P78367 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NKX3-2P78367 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
NKX3-2P78367 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.8■■□□□ 1.72
NKX3-2P78367 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
NKX3-2P78367 SERBP1P1-201ENST00000396021 1160 ntBASIC25.8■■□□□ 1.72
NKX3-2P78367 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.8■■□□□ 1.72
NKX3-2P78367 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
NKX3-2P78367 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
NKX3-2P78367 RASA4CP-201ENST00000424092 1398 ntBASIC25.8■■□□□ 1.72
NKX3-2P78367 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
NKX3-2P78367 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.79■■□□□ 1.72
NKX3-2P78367 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NKX3-2P78367 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NKX3-2P78367 AC097381.1-201ENST00000429019 1296 ntBASIC25.79■■□□□ 1.72
NKX3-2P78367 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.79■■□□□ 1.72
NKX3-2P78367 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NKX3-2P78367 AC011298.3-201ENST00000615796 283 ntBASIC25.79■■□□□ 1.72
NKX3-2P78367 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.79■■□□□ 1.72
NKX3-2P78367 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NKX3-2P78367 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
NKX3-2P78367 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.78■■□□□ 1.72
NKX3-2P78367 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.78■■□□□ 1.72
NKX3-2P78367 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
NKX3-2P78367 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.78■■□□□ 1.72
NKX3-2P78367 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
NKX3-2P78367 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
NKX3-2P78367 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
NKX3-2P78367 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
NKX3-2P78367 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.78■■□□□ 1.72
NKX3-2P78367 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC25.77■■□□□ 1.72
NKX3-2P78367 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
NKX3-2P78367 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
NKX3-2P78367 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
NKX3-2P78367 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
NKX3-2P78367 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
NKX3-2P78367 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.76■■□□□ 1.71
NKX3-2P78367 CA15P2-201ENST00000611168 834 ntBASIC25.76■■□□□ 1.71
NKX3-2P78367 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
NKX3-2P78367 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
NKX3-2P78367 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
NKX3-2P78367 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
NKX3-2P78367 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
NKX3-2P78367 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.75■■□□□ 1.71
NKX3-2P78367 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
NKX3-2P78367 MIR6089-201ENST00000616698 64 ntBASIC25.75■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms