Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TRAV17A0A0B4J275 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 AC142381.2-201ENST00000566120 298 ntBASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV17A0A0B4J275 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV17A0A0B4J275 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV17A0A0B4J275 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV17A0A0B4J275 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV17A0A0B4J275 AC135279.3-201ENST00000610945 1311 ntBASIC21.05■□□□□ 0.96
TRAV17A0A0B4J275 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV17A0A0B4J275 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAV17A0A0B4J275 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.05■□□□□ 0.96
TRAV17A0A0B4J275 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAV17A0A0B4J275 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV17A0A0B4J275 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TRAV17A0A0B4J275 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TRAV17A0A0B4J275 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 DUX4L19-201ENST00000557448 1267 ntBASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV17A0A0B4J275 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV17A0A0B4J275 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV17A0A0B4J275 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV17A0A0B4J275 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV17A0A0B4J275 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.03■□□□□ 0.96
TRAV17A0A0B4J275 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV17A0A0B4J275 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.03■□□□□ 0.96
TRAV17A0A0B4J275 SLC6A10P-202ENST00000431994 2058 ntBASIC21.03■□□□□ 0.96
TRAV17A0A0B4J275 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 EDA-201ENST00000338901 1233 ntBASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 AC092171.4-201ENST00000609130 632 ntBASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 MIR6089-201ENST00000616698 64 ntBASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 AC131274.2-201ENST00000580697 1507 ntBASIC21.02■□□□□ 0.96
TRAV17A0A0B4J275 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRAV17A0A0B4J275 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV17A0A0B4J275 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV17A0A0B4J275 DUSP8P4-201ENST00000399538 1761 ntBASIC21.01■□□□□ 0.95
TRAV17A0A0B4J275 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV17A0A0B4J275 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV17A0A0B4J275 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV17A0A0B4J275 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV17A0A0B4J275 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV17A0A0B4J275 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 AC024257.2-201ENST00000549699 147 ntBASIC21■□□□□ 0.95
TRAV17A0A0B4J275 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 AL022069.1-201ENST00000568025 1636 ntBASIC21■□□□□ 0.95
TRAV17A0A0B4J275 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV17A0A0B4J275 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 AL355001.2-201ENST00000620617 1191 ntBASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV17A0A0B4J275 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.98■□□□□ 0.95
TRAV17A0A0B4J275 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.98■□□□□ 0.95
TRAV17A0A0B4J275 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.98■□□□□ 0.95
TRAV17A0A0B4J275 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV17A0A0B4J275 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.98■□□□□ 0.95
TRAV17A0A0B4J275 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 SUDS3P1-201ENST00000505831 966 ntBASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV17A0A0B4J275 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.96■□□□□ 0.95
TRAV17A0A0B4J275 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV17A0A0B4J275 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms