Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 MESTP3-201ENST00000503460 968 ntBASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 AC138951.2-201ENST00000623455 1161 ntBASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 TNRC18P2-201ENST00000417666 2714 ntBASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM35Q9UPQ4 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 MARS-233ENST00000628866 2583 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 CD8B2-202ENST00000417670 633 ntBASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 BNIP3P42-201ENST00000454982 569 ntBASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 AL391280.1-201ENST00000506969 1062 ntBASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 AP005482.1-201ENST00000563722 1273 ntBASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 BNIP3P29-201ENST00000598302 571 ntBASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 AC011447.5-201ENST00000616168 564 ntBASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM35Q9UPQ4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
TRIM35Q9UPQ4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
TRIM35Q9UPQ4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 RN7SKP230-201ENST00000365642 335 ntBASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 HLA-V-201ENST00000429037 534 ntBASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 KRT223P-202ENST00000449164 1292 ntBASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AL008721.1-201ENST00000609964 604 ntBASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AC138466.3-201ENST00000619983 221 ntBASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM35Q9UPQ4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 151.2 ms