Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 REXO1L2P-201ENST00000425429 2069 ntBASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 AC009093.2-202ENST00000620513 2079 ntBASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 AC012508.2-201ENST00000567613 1472 ntBASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PAAF1Q9BRP4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.21■□□□□ 0.18
PAAF1Q9BRP4 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PAAF1Q9BRP4 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.21■□□□□ 0.18
PAAF1Q9BRP4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.21■□□□□ 0.18
PAAF1Q9BRP4 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PAAF1Q9BRP4 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 AC100850.1-201ENST00000506768 649 ntBASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 AC005730.2-201ENST00000564549 1184 ntBASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 ZACNP1-201ENST00000612259 710 ntBASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 AC244157.2-201ENST00000616239 1006 ntBASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 AP001002.3-201ENST00000623482 206 ntBASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 AC020910.5-201ENST00000623668 1865 ntBASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PAAF1Q9BRP4 FKBP4P6-201ENST00000457486 1332 ntBASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 AC079178.1-201ENST00000420915 656 ntBASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PAAF1Q9BRP4 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms