Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FAM84A-202ENST00000331243 3765 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PIWIL1-201ENST00000245255 3897 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 EFL1-201ENST00000268206 3675 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DNAJB12-201ENST00000338820 4360 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 NELL2-203ENST00000429094 3612 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AGER-214ENST00000538695 487 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 MIR4321-201ENST00000592276 80 ntBASIC4.79□□□□□ -1.64
SYNE1Q8NF91 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 KDM2B-219ENST00000611216 3434 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KRT18P64-201ENST00000434946 1219 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KLF2P4-201ENST00000451959 1225 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CTBP2P5-201ENST00000454986 1264 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AP001889.1-201ENST00000525414 633 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC104989.1-201ENST00000519711 778 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC025279.2-201ENST00000569730 653 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 MIR6069-201ENST00000620069 79 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 GPR173-201ENST00000332582 4485 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PAPLN-203ENST00000554301 4090 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms