Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 RPSAP52-203ENST00000622976 1023 ntBASIC18.52■□□□□ 0.56
VPS53Q5VIR6 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
VPS53Q5VIR6 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.52■□□□□ 0.55
VPS53Q5VIR6 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 MROH4P-201ENST00000431302 1578 ntBASIC18.51■□□□□ 0.55
VPS53Q5VIR6 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 AL596325.1-201ENST00000563991 1082 ntBASIC18.51■□□□□ 0.55
VPS53Q5VIR6 AC120045.2-201ENST00000567334 178 ntBASIC18.51■□□□□ 0.55
VPS53Q5VIR6 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 AC105233.6-201ENST00000642093 218 ntBASIC18.51■□□□□ 0.55
VPS53Q5VIR6 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.51■□□□□ 0.55
VPS53Q5VIR6 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 CICP24-201ENST00000605464 2705 ntBASIC18.5■□□□□ 0.55
VPS53Q5VIR6 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 AL442647.2-201ENST00000429864 857 ntBASIC18.5■□□□□ 0.55
VPS53Q5VIR6 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 RN7SL692P-201ENST00000464677 288 ntBASIC18.5■□□□□ 0.55
VPS53Q5VIR6 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 AL161772.1-201ENST00000610494 4412 ntBASIC18.5■□□□□ 0.55
VPS53Q5VIR6 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS53Q5VIR6 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms