Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAIPQ9BWF2 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 AL645937.2-201ENST00000396808 931 ntBASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 ACTBP8-201ENST00000403258 1108 ntBASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 AC026954.1-201ENST00000429771 1293 ntBASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAIPQ9BWF2 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 YBX1P6-201ENST00000442962 1002 ntBASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AC006058.4-201ENST00000624016 1670 ntBASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms