Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 AL139099.5-201ENST00000635274 300 ntBASIC14.89□□□□□ -0.03
LMX1AQ8TE12 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 AC055811.4-201ENST00000624039 1754 ntBASIC14.88□□□□□ -0.03
LMX1AQ8TE12 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.88□□□□□ -0.03
LMX1AQ8TE12 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 PPY2P-201ENST00000582808 702 ntBASIC14.88□□□□□ -0.03
LMX1AQ8TE12 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 AL023775.1-201ENST00000454907 1746 ntBASIC14.88□□□□□ -0.03
LMX1AQ8TE12 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LMX1AQ8TE12 AP005117.1-202ENST00000581724 1908 ntBASIC14.88□□□□□ -0.03
LMX1AQ8TE12 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 POM121L8P-201ENST00000417732 1281 ntBASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 POM121L9P-203ENST00000441984 1285 ntBASIC14.87□□□□□ -0.03
LMX1AQ8TE12 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AC244452.3-201ENST00000636814 210 ntBASIC14.87□□□□□ -0.03
LMX1AQ8TE12 AC068587.10-201ENST00000641210 219 ntBASIC14.87□□□□□ -0.03
LMX1AQ8TE12 REXO1L5P-201ENST00000622260 2098 ntBASIC14.87□□□□□ -0.03
LMX1AQ8TE12 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1AQ8TE12 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms