Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 AL583805.1-201ENST00000391389 531 ntBASIC18■□□□□ 0.47
SMC1BQ8NDV3 AL357563.1-201ENST00000404728 395 ntBASIC18■□□□□ 0.47
SMC1BQ8NDV3 HIST2H2BA-201ENST00000412169 381 ntBASIC18■□□□□ 0.47
SMC1BQ8NDV3 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 MESTP3-201ENST00000503460 968 ntBASIC18■□□□□ 0.47
SMC1BQ8NDV3 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 LINC01783-202ENST00000614408 828 ntBASIC18■□□□□ 0.47
SMC1BQ8NDV3 BX284668.2-205ENST00000619677 828 ntBASIC18■□□□□ 0.47
SMC1BQ8NDV3 MIR6816-201ENST00000620368 66 ntBASIC18■□□□□ 0.47
SMC1BQ8NDV3 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 SHC1P1-201ENST00000425230 1745 ntBASIC18■□□□□ 0.47
SMC1BQ8NDV3 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SMC1BQ8NDV3 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18■□□□□ 0.47
SMC1BQ8NDV3 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 COX20P1-201ENST00000366529 357 ntBASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 KRT17P4-201ENST00000429445 819 ntBASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AC012441.2-201ENST00000444843 739 ntBASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AC093752.3-201ENST00000567343 901 ntBASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 MIR4522-201ENST00000584932 87 ntBASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AC025262.2-201ENST00000623975 1056 ntBASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AC002472.4-201ENST00000641915 272 ntBASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SMC1BQ8NDV3 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 RN7SL396P-201ENST00000471086 295 ntBASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 NDUFS6P1-201ENST00000485187 316 ntBASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SMC1BQ8NDV3 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms